Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron complex transport system atp-binding protein | CLV88_11053 | Not Available | Negative | 3052073 - 3052855 | 28570.4 |
| putative metal-binding protein | CLV88_11054 | Not Available | Negative | 3052852 - 3053259 | 14939.7 |
| alpha/beta hydrolase family protein duf900 | CLV88_11056 | Not Available | Positive | 3053749 - 3054720 | 36828.5 |
| hypothetical protein | CLV88_11057 | Not Available | Negative | 3054851 - 3055174 | 11915.9 |
| Trna-arg | Not Available | Not Available | Positive | 3055346 - 3055422 | Not Available |
| signal transduction histidine kinase | CLV88_11059 | Not Available | Negative | 3055495 - 3056883 | 50669.7 |
| pyruvate/2-oxoglutarate dehydrogenase complex dihydrolipoamide dehydrogenase (e3) component | CLV88_11060 | Not Available | Negative | 3056904 - 3058322 | 49760.2 |
| putative membrane protein ydjx (tvp38/tmem64 family) | CLV88_11061 | Not Available | Negative | 3058322 - 3059065 | 26384.0 |
| lsu ribosomal protein l34p | CLV88_11062 | Not Available | Positive | 3059357 - 3059491 | 5169.46 |
| ribonuclease p protein component | CLV88_11063 | Not Available | Positive | 3059519 - 3059935 | 15507.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
