Shimia abyssi str. DSM 100673

star/dumbbell/pleomorphicaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Shimia

Description

Shimia abyssi strain DSM 100673 is a Gram-negative, aerobic microbe characterized by its unique star or dumbbell shape and pleomorphic morphology. This organism does not form spores and thrives optimally at a temperature of 25.0°C. Shimia abyssi is classified as an organotroph and chemotroph, indicating its reliance on organic compounds for energy and its ability to oxidize them in the presence of oxygen. The distinct morphology of Shimia abyssi, alongside its metabolic capabilities, suggests that it may occupy specific ecological niches where organic substrates are readily available, potentially within marine environments or other organic-rich habitats. The absence of sporulation may indicate a lifestyle that relies on stable environmental conditions, as sporulation typically serves as a survival strategy in fluctuating environments. Further investigation into its ecological role could provide insights into its interactions with other microorganisms and its contributions to biogeochemical cycles in its native habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusShimia
SpeciesShimia abyssi
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shapestar/dumbbell/pleomorphic
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceorganotroph; chemotroph
PathogenicityNot Available

Genome Summary

Shimia abyssi str. DSM 100673

Accession NumberPYGJ00000000.1

Gene Summary

Adenine Count

1044865 bp

Thymine Count

1029763 bp

Guanine Count

1300044 bp

Cytosine Count

1357929 bp

Genome Length

4732601 bp

Protein-coding Genes

4533 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
porinCLV88_1012Not Available-152 - 132441935.1
hypothetical proteinCLV88_1013Not Available-1314 - 206927545.8
23s ribosomal rnaNot AvailableNot Available+2981 - 5853Not Available
imidazolonepropionase-like amidohydrolaseCLV88_1014Not Available-2136 - 352149137.2
arac-like dna-binding proteinCLV88_1015Not Available+3712 - 470736338.8
uncharacterized protein (duf1330 family)CLV88_1016Not Available-4715 - 49759785.35
hypothetical proteinCLV88_1017Not Available+5099 - 552415381.0
5s ribosomal rnaNot AvailableNot Available+5962 - 6076Not Available
anhydro-n-acetylmuramic acid kinaseCLV88_1018Not Available-5691 - 679738164.5
tyrosyl-trna synthetaseCLV88_1019Not Available+6861 - 810845386.2

Displaying genes 21 – 30 of 4601 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites