Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase involved in cell wall biosynthesis | CLV88_11043 | Not Available | Positive | 3034229 - 3035398 | 43416.3 |
| hypothetical protein | CLV88_11044 | Not Available | Negative | 3035404 - 3036834 | 52482.4 |
| hypothetical protein | CLV88_11045 | Not Available | Negative | 3036892 - 3038865 | 71150.4 |
| hypothetical protein | CLV88_11046 | Not Available | Positive | 3038994 - 3039632 | 22457.1 |
| aaa atpase-like protein | CLV88_11047 | Not Available | Negative | 3039641 - 3042790 | 115342.0 |
| hypothetical protein | CLV88_11048 | Not Available | Positive | 3043044 - 3044504 | 52327.9 |
| alpha/beta hydrolase family protein | CLV88_11049 | Not Available | Positive | 3044504 - 3048769 | 154496.0 |
| no-binding membrane sensor protein with mhyt domain | CLV88_11050 | Not Available | Positive | 3048935 - 3050056 | 39347.7 |
| iron complex transport system permease protein | CLV88_11051 | Not Available | Negative | 3050062 - 3051138 | 37215.9 |
| iron complex transport system substrate-binding protein | CLV88_11052 | Not Available | Negative | 3051126 - 3052061 | 33736.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
