Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| celd/bcsl family acetyltransferase involved in cellulose biosynthesis | CLV88_11033 | Not Available | Positive | 3019930 - 3021000 | 39989.3 |
| rraa family protein | CLV88_11034 | Not Available | Positive | 3021229 - 3021963 | 26164.4 |
| putative atp-grasp superfamily atp-dependent carboligase | CLV88_11035 | Not Available | Positive | 3022026 - 3023213 | 45193.6 |
| o-antigen/teichoic acid export membrane protein | CLV88_11036 | Not Available | Positive | 3023265 - 3024686 | 51590.6 |
| lipopolysaccharide/colanic/teichoic acid biosynthesis glycosyltransferase | CLV88_11037 | Not Available | Positive | 3025033 - 3025737 | 26437.3 |
| glycosyltransferase involved in cell wall biosynthesis | CLV88_11038 | Not Available | Negative | 3025999 - 3027216 | 44955.9 |
| polysaccharide pyruvyl transferase wcak-like protein | CLV88_11039 | Not Available | Positive | 3027364 - 3028542 | 42308.0 |
| hypothetical protein | CLV88_11040 | Not Available | Negative | 3028551 - 3030239 | 60737.0 |
| hypothetical protein | CLV88_11041 | Not Available | Negative | 3030241 - 3031677 | 51858.1 |
| uncharacterized protein involved in exopolysaccharide biosynthesis | CLV88_11042 | Not Available | Positive | 3032023 - 3034242 | 81644.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
