Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c peroxidase | CLV88_11023 | Not Available | Negative | 3010490 - 3011728 | 44634.9 |
| hypothetical protein | CLV88_11024 | Not Available | Positive | 3011810 - 3012280 | 17493.1 |
| trap-type c4-dicarboxylate transport system substrate-binding protein | CLV88_11025 | Not Available | Negative | 3012335 - 3013393 | 37847.0 |
| tripartite atp-independent transporter dctm subunit | CLV88_11026 | Not Available | Negative | 3013433 - 3014929 | 52679.1 |
| trap-type c4-dicarboxylate transport system permease small subunit | CLV88_11027 | Not Available | Negative | 3014929 - 3015510 | 21227.7 |
| deor family transcriptional regulator | CLV88_11028 | Not Available | Negative | 3015637 - 3016407 | 27445.0 |
| glutamine--fructose-6-phosphate transaminase | CLV88_11029 | Not Available | Negative | 3016506 - 3017534 | 36363.3 |
| gntr family transcriptional regulator | CLV88_11030 | Not Available | Negative | 3017548 - 3018342 | 29542.5 |
| hypothetical protein | CLV88_11031 | Not Available | Negative | 3018444 - 3018596 | 5820.18 |
| aspartate aminotransferase | CLV88_11032 | Not Available | Positive | 3018722 - 3019924 | 43056.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
