Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| monosaccharide abc transporter atp-binding protein (cut2 family) | CLV88_1103 | Not Available | Negative | 2989532 - 2990326 | 28428.5 |
| monosaccharide abc transporter membrane protein (cut2 family) | CLV88_1104 | Not Available | Negative | 2990328 - 2991452 | 39855.9 |
| monosaccharide abc transporter substrate-binding protein (cut2 family) | CLV88_1105 | Not Available | Negative | 2991536 - 2992486 | 33224.2 |
| laci family transcriptional regulator | CLV88_1106 | Not Available | Positive | 2992668 - 2993669 | 36680.9 |
| putative dehydrogenase | CLV88_1107 | Not Available | Negative | 2993677 - 2994810 | 40652.0 |
| 2-keto-myo-inositol dehydratase | CLV88_1108 | Not Available | Negative | 2994905 - 2995798 | 33000.8 |
| putative dehydrogenase | CLV88_1109 | Not Available | Negative | 2995816 - 2996922 | 40156.7 |
| 3d-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase | CLV88_11010 | Not Available | Positive | 2997068 - 2998936 | 67658.9 |
| 5-dehydro-2-deoxygluconokinase | CLV88_11011 | Not Available | Positive | 2998936 - 2999919 | 34604.6 |
| 5-deoxyglucuronate isomerase | CLV88_11012 | Not Available | Positive | 2999941 - 3000783 | 31331.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
