Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase involved in cell wall biosynthesis | CLV88_109137 | Not Available | Positive | 2966782 - 2968017 | 45897.2 |
| glycosyltransferase involved in cell wall biosynthesis | CLV88_109138 | Not Available | Positive | 2968022 - 2969098 | 39697.7 |
| putative phosphoglycerate mutase | CLV88_109139 | Not Available | Positive | 2969095 - 2969682 | 21740.1 |
| putative glycosyltransferase | CLV88_109140 | Not Available | Positive | 2969679 - 2970821 | 40504.4 |
| hypothetical protein | CLV88_109141 | Not Available | Positive | 2970818 - 2971573 | 28460.2 |
| s-adenosylmethionine-dependent methyltransferase | CLV88_109142 | Not Available | Positive | 2971570 - 2972046 | 17224.9 |
| putative protease | CLV88_109143 | Not Available | Negative | 2972049 - 2973704 | 62684.8 |
| kynureninase | CLV88_109144 | Not Available | Positive | 2973932 - 2975125 | 43553.3 |
| acyl-coa reductase-like nad-dependent aldehyde dehydrogenase | CLV88_109145 | Not Available | Negative | 2975176 - 2976666 | 53221.5 |
| putative membrane protein yfca | CLV88_109146 | Not Available | Positive | 2976946 - 2977764 | 28310.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
