Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized protein duf4833 | CLV88_109127 | Not Available | Negative | 2952782 - 2953411 | 24068.0 |
| 7-keto-8-aminopelargonate synthetase-like enzyme | CLV88_109128 | Not Available | Negative | 2953416 - 2954642 | 44461.5 |
| s-adenosylmethionine-dependent methyltransferase | CLV88_109129 | Not Available | Negative | 2954822 - 2955313 | 18227.9 |
| peptide/nickel transport system atp-binding protein | CLV88_109130 | Not Available | Positive | 2955433 - 2957331 | 69185.8 |
| peptide/nickel transport system substrate-binding protein | CLV88_109131 | Not Available | Positive | 2957324 - 2959216 | 71739.9 |
| peptide/nickel transport system permease protein | CLV88_109132 | Not Available | Positive | 2959227 - 2960255 | 37487.9 |
| peptide/nickel transport system permease protein | CLV88_109133 | Not Available | Positive | 2960252 - 2961403 | 42855.4 |
| small-conductance mechanosensitive channel | CLV88_109134 | Not Available | Negative | 2961675 - 2964035 | 87059.2 |
| udp-n-acetyl-d-galactosamine dehydrogenase | CLV88_109135 | Not Available | Positive | 2964260 - 2965537 | 45831.8 |
| putative glycosyltransferase | CLV88_109136 | Not Available | Positive | 2965547 - 2966785 | 45454.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
