Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding ntrc family response regulator | CLV88_109107 | Not Available | Positive | 2929136 - 2930530 | 51400.2 |
| hamp domain-containing protein | CLV88_109108 | Not Available | Positive | 2930523 - 2932529 | 73918.8 |
| ftsp/cota-like multicopper oxidase with cupredoxin domain | CLV88_109109 | Not Available | Positive | 2932526 - 2933896 | 50394.9 |
| arac family transcriptional regulator with amidase-like domain | CLV88_109110 | Not Available | Negative | 2933900 - 2934850 | 34706.9 |
| trimethylamine--corrinoid protein co-methyltransferase | CLV88_109111 | Not Available | Negative | 2934931 - 2936478 | 56835.8 |
| uncharacterized protein duf1647 | CLV88_109112 | Not Available | Negative | 2936596 - 2938278 | 64332.7 |
| hypothetical protein | CLV88_109113 | Not Available | Positive | 2938356 - 2939318 | 35669.1 |
| putative atp-binding cassette transporter | CLV88_109114 | Not Available | Positive | 2939327 - 2941090 | 64595.2 |
| frag1/dram/sfk1 family protein | CLV88_109115 | Not Available | Positive | 2941087 - 2941854 | 28535.2 |
| cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase/archaetidylinositol phosphate synthase | CLV88_109116 | Not Available | Negative | 2941830 - 2942438 | 22362.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
