Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ohcu decarboxylase | CLV88_101257 | Not Available | Positive | 251480 - 252895 | 52986.3 |
| ureidoglycolate lyase | CLV88_101258 | Not Available | Positive | 252892 - 253377 | 17457.7 |
| ncs2 family nucleobase:cation symporter-2 | CLV88_101259 | Not Available | Positive | 253478 - 254902 | 48276.3 |
| pyruvate dehydrogenase e1 component | CLV88_101260 | Not Available | Positive | 255092 - 257746 | 99400.9 |
| pyruvate dehydrogenase e2 component (dihydrolipoamide acetyltransferase) | CLV88_101261 | Not Available | Positive | 257772 - 259034 | 44045.8 |
| dihydrolipoamide dehydrogenase | CLV88_101262 | Not Available | Positive | 259047 - 260792 | 60425.4 |
| di/tricarboxylate transporter | CLV88_101263 | Not Available | Negative | 260906 - 262684 | 63892.6 |
| drug/metabolite transporter (dmt)-like permease | CLV88_101264 | Not Available | Negative | 262730 - 263602 | 30933.1 |
| hypothetical protein | CLV88_101265 | Not Available | Negative | 263622 - 264440 | 29417.6 |
| ribosomal protein s18 acetylase rimi-like enzyme | CLV88_101266 | Not Available | Positive | 264664 - 265245 | 20974.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
