Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4fe-4s dicluster protein | CLV88_10997 | Not Available | Negative | 2918269 - 2920230 | 69307.9 |
| uncharacterized protein duf3305 | CLV88_10998 | Not Available | Positive | 2920570 - 2921118 | 20452.2 |
| uncharacterized protein duf3306 | CLV88_10999 | Not Available | Positive | 2921115 - 2921795 | 24940.7 |
| tora maturation chaperone tord | CLV88_109100 | Not Available | Positive | 2921792 - 2922400 | 22271.7 |
| secreted protein | CLV88_109101 | Not Available | Positive | 2922450 - 2922644 | 6991.07 |
| formate dehydrogenase alpha subunit | CLV88_109102 | Not Available | Positive | 2922858 - 2925752 | 106969.0 |
| formate dehydrogenase beta subunit | CLV88_109103 | Not Available | Positive | 2925768 - 2926364 | 21367.4 |
| formate dehydrogenase gamma subunit | CLV88_109104 | Not Available | Positive | 2926495 - 2927703 | 44246.3 |
| cytochrome c | CLV88_109105 | Not Available | Positive | 2927705 - 2929003 | 46625.3 |
| hypothetical protein | CLV88_109106 | Not Available | Positive | 2929005 - 2929130 | 4135.97 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
