Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-coa isomerase | CLV88_10977 | Not Available | Positive | 2899340 - 2900134 | 27363.0 |
| xre family transcriptional regulator | CLV88_10978 | Not Available | Negative | 2900155 - 2901129 | 35368.3 |
| acyl-coa thioesterase fadm | CLV88_10979 | Not Available | Negative | 2901226 - 2901654 | 16334.6 |
| benzoyl-coa oxygenase subunit a | CLV88_10980 | Not Available | Negative | 2901657 - 2902841 | 43271.5 |
| hypothetical protein | CLV88_10981 | Not Available | Negative | 2902838 - 2903011 | 5905.17 |
| benzoyl-coa oxygenase subunit b | CLV88_10982 | Not Available | Negative | 2903125 - 2904576 | 54981.4 |
| 2,3-dihydro-2,3-dihydroxybenzoyl-coa ring cleavage enzyme | CLV88_10983 | Not Available | Negative | 2904634 - 2906295 | 61129.6 |
| hypothetical protein | CLV88_10984 | Not Available | Negative | 2906441 - 2906872 | 16369.5 |
| pimeloyl-acp methyl ester carboxylesterase | CLV88_10985 | Not Available | Negative | 2906860 - 2907690 | 30425.0 |
| benzoate-coa ligase | CLV88_10986 | Not Available | Negative | 2907690 - 2909228 | 55799.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
