Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_10947 | Not Available | Positive | 2866414 - 2867490 | 40196.6 |
| hypothetical protein | CLV88_10948 | Not Available | Positive | 2867487 - 2867801 | 11595.2 |
| hypothetical protein | CLV88_10949 | Not Available | Positive | 2867798 - 2868922 | 43005.1 |
| atpase family protein associated with various cellular activities (aaa) | CLV88_10950 | Not Available | Positive | 2868992 - 2870926 | 70746.2 |
| hypothetical protein | CLV88_10951 | Not Available | Positive | 2870923 - 2871219 | 10623.4 |
| hypothetical protein | CLV88_10952 | Not Available | Positive | 2871320 - 2872663 | 50482.0 |
| hypothetical protein | CLV88_10953 | Not Available | Positive | 2872667 - 2872933 | 10229.8 |
| uncharacterized protein duf1523 | CLV88_10954 | Not Available | Positive | 2872946 - 2873602 | 25568.2 |
| hypothetical protein | CLV88_10955 | Not Available | Positive | 2873717 - 2873854 | 5198.3 |
| dmso reductase anchor subunit | CLV88_10956 | Not Available | Negative | 2873909 - 2874781 | 31459.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
