Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_10927 | Not Available | Negative | 2844109 - 2844936 | 31355.7 |
| 3-isopropylmalate/(r)-2-methylmalate dehydratase small subunit | CLV88_10928 | Not Available | Negative | 2845149 - 2845754 | 22211.6 |
| 3-isopropylmalate/(r)-2-methylmalate dehydratase large subunit | CLV88_10929 | Not Available | Negative | 2845839 - 2847245 | 50555.3 |
| mechanosensitive ion channel-like protein | CLV88_10930 | Not Available | Positive | 2847489 - 2848961 | 54967.6 |
| ribosome-associated protein | CLV88_10931 | Not Available | Positive | 2849185 - 2849610 | 15638.6 |
| 23s rrna (pseudouridine1915-n3)-methyltransferase | CLV88_10932 | Not Available | Positive | 2849654 - 2850130 | 17047.8 |
| putative membrane protein | CLV88_10933 | Not Available | Negative | 2850271 - 2850987 | 26469.4 |
| glycolate oxidase | CLV88_10934 | Not Available | Positive | 2851071 - 2852510 | 51191.5 |
| glycolate oxidase fad binding subunit | CLV88_10935 | Not Available | Positive | 2852574 - 2853710 | 39516.0 |
| glycolate oxidase iron-sulfur subunit | CLV88_10936 | Not Available | Positive | 2853715 - 2855037 | 48291.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
