Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac family transcriptional regulator | CLV88_10917 | Not Available | Negative | 2833702 - 2834781 | 39839.9 |
| 5-deoxyglucuronate isomerase | CLV88_10918 | Not Available | Negative | 2834863 - 2835669 | 29786.0 |
| 2-keto-myo-inositol dehydratase | CLV88_10919 | Not Available | Negative | 2835675 - 2836598 | 33884.9 |
| myo-inositol 2-dehydrogenase | CLV88_10920 | Not Available | Negative | 2836621 - 2837622 | 35889.6 |
| putative membrane protein | CLV88_10921 | Not Available | Negative | 2837784 - 2838719 | 33336.0 |
| 3-isopropylmalate dehydrogenase | CLV88_10922 | Not Available | Negative | 2838842 - 2839945 | 39532.1 |
| lysr family transcriptional regulator | CLV88_10923 | Not Available | Negative | 2840007 - 2840903 | 32924.9 |
| dtdp-4-dehydrorhamnose reductase | CLV88_10924 | Not Available | Positive | 2840998 - 2841915 | 33719.3 |
| endonuclease/exonuclease/phosphatase family protein | CLV88_10925 | Not Available | Negative | 2841856 - 2842830 | 35079.6 |
| hypothetical protein | CLV88_10926 | Not Available | Negative | 2842887 - 2843720 | 30740.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
