Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_1097 | Not Available | Positive | 2824683 - 2824853 | 6205.33 |
| udp-n-acetylglucosamine 1-carboxyvinyltransferase | CLV88_1098 | Not Available | Positive | 2824853 - 2826121 | 44507.1 |
| protein of unknown function (duf2948) | CLV88_1099 | Not Available | Positive | 2826118 - 2826597 | 17766.1 |
| histidinol dehydrogenase | CLV88_10910 | Not Available | Positive | 2826666 - 2827967 | 45786.3 |
| d-alanine transaminase | CLV88_10911 | Not Available | Negative | 2828070 - 2828930 | 31631.8 |
| hypothetical protein | CLV88_10912 | Not Available | Negative | 2828976 - 2829791 | 29506.5 |
| l-alanine-dl-glutamate epimerase-like enolase superfamily enzyme | CLV88_10913 | Not Available | Negative | 2829865 - 2830827 | 34084.0 |
| putative nad-dependent epimerase/dehydratase family protein | CLV88_10914 | Not Available | Negative | 2830898 - 2831899 | 35894.1 |
| beta-methylmalyl-coa/l-malyl-coa lyase | CLV88_10915 | Not Available | Positive | 2832185 - 2833144 | 34071.6 |
| uncharacterized protein (duf302 family) | CLV88_10916 | Not Available | Positive | 2833226 - 2833693 | 16810.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
