Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna topoisomerase iv subunit b | CLV88_101247 | Not Available | Positive | 241887 - 243845 | 72162.7 |
| hypothetical protein | CLV88_101248 | Not Available | Positive | 243842 - 244711 | 33492.7 |
| hypothetical protein | CLV88_101249 | Not Available | Positive | 244856 - 245581 | 26170.3 |
| hypothetical protein | CLV88_101250 | Not Available | Positive | 245628 - 246380 | 27350.5 |
| hypothetical protein | CLV88_101251 | Not Available | Positive | 246429 - 247106 | 25677.4 |
| pa14 domain-containing protein | CLV88_101252 | Not Available | Negative | 247205 - 247780 | 20490.8 |
| phosphoglycolate phosphatase | CLV88_101253 | Not Available | Negative | 247898 - 248557 | 24015.1 |
| putative membrane protein | CLV88_101254 | Not Available | Negative | 248680 - 249915 | 46686.9 |
| lysr family transcriptional regulator | CLV88_101255 | Not Available | Positive | 250020 - 250928 | 33611.5 |
| 5-hydroxyisourate hydrolase | CLV88_101256 | Not Available | Negative | 250972 - 251328 | 13117.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
