Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carbohydrate abc transporter atp-binding protein (cut1 family) | CLV88_108174 | Not Available | Negative | 2815522 - 2816541 | 36607.1 |
| deor family transcriptional regulator | CLV88_108175 | Not Available | Negative | 2816538 - 2817317 | 28043.8 |
| had superfamily hydrolase (tigr01450 family) | CLV88_108176 | Not Available | Positive | 2817552 - 2818436 | 32710.6 |
| hypothetical protein | CLV88_108177 | Not Available | Positive | 2818631 - 2818717 | 3488.4 |
| hypothetical protein | CLV88_1091 | Not Available | Negative | 2819103 - 2819285 | 6861.17 |
| lysine decarboxylase transcriptional regulator cadc | CLV88_1092 | Not Available | Positive | 2819441 - 2820631 | 43877.3 |
| site-specific recombinase xerd | CLV88_1093 | Not Available | Negative | 2820853 - 2822016 | 43604.1 |
| hypothetical protein | CLV88_1094 | Not Available | Positive | 2823661 - 2823780 | 4553.81 |
| hypothetical protein | CLV88_1095 | Not Available | Negative | 2823816 - 2824310 | 18607.3 |
| Trna-thr | Not Available | Not Available | Positive | 2824522 - 2824596 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
