Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative dsba family dithiol-disulfide isomerase | CLV88_108154 | Not Available | Negative | 2788197 - 2788865 | 24693.9 |
| hypothetical protein | CLV88_108155 | Not Available | Negative | 2788942 - 2789871 | 32895.0 |
| phosphoribosyl 1,2-cyclic phosphate phosphodiesterase | CLV88_108156 | Not Available | Negative | 2789884 - 2790684 | 29531.0 |
| tatd dnase family protein | CLV88_108157 | Not Available | Negative | 2790681 - 2791487 | 29395.7 |
| dna polymerase iii delta prime subunit | CLV88_108158 | Not Available | Negative | 2791492 - 2792610 | 40505.5 |
| thymidylate kinase | CLV88_108159 | Not Available | Negative | 2792607 - 2793218 | 22602.9 |
| d-alanyl-d-alanine carboxypeptidase (penicillin-binding protein 5/6) | CLV88_108160 | Not Available | Negative | 2793230 - 2794408 | 42258.3 |
| sporulation related protein | CLV88_108161 | Not Available | Negative | 2794421 - 2795305 | 30966.7 |
| Trna-ser | Not Available | Not Available | Positive | 2795513 - 2795602 | Not Available |
| phage integrase family protein | CLV88_108163 | Not Available | Positive | 2796028 - 2796654 | 23896.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
