Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycine betaine transporter | CLV88_108134 | Not Available | Negative | 2768159 - 2769637 | 52554.2 |
| nad(p) transhydrogenase | CLV88_108135 | Not Available | Negative | 2769776 - 2771212 | 53133.5 |
| s-formylglutathione hydrolase | CLV88_108136 | Not Available | Negative | 2771237 - 2772070 | 30688.9 |
| hypothetical protein | CLV88_108137 | Not Available | Negative | 2772114 - 2773043 | 32615.9 |
| rubrerythrin | CLV88_108138 | Not Available | Negative | 2773133 - 2774107 | 35446.3 |
| tetr family transcriptional regulator | CLV88_108139 | Not Available | Positive | 2774238 - 2774855 | 23141.9 |
| putative membrane protein | CLV88_108140 | Not Available | Negative | 2774909 - 2775310 | 14959.2 |
| sam-dependent methyltransferase | CLV88_108141 | Not Available | Negative | 2775397 - 2776032 | 23300.6 |
| cytochrome c oxidase subunit 1 | CLV88_108142 | Not Available | Negative | 2776107 - 2777780 | 62167.1 |
| 2-methylisocitrate lyase-like pep mutase family enzyme | CLV88_108143 | Not Available | Positive | 2778056 - 2778889 | 28894.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
