Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methyltransferase family protein | CLV88_108124 | Not Available | Positive | 2762051 - 2762866 | 29952.5 |
| peptidase m48-like protein | CLV88_108125 | Not Available | Negative | 2762878 - 2763621 | 26655.5 |
| chase2 domain-containing protein | CLV88_108126 | Not Available | Positive | 2763751 - 2764536 | 29123.5 |
| hypothetical protein | CLV88_108127 | Not Available | Positive | 2764585 - 2765169 | 21971.5 |
| hypothetical protein | CLV88_108128 | Not Available | Positive | 2765211 - 2765516 | 11331.2 |
| lysr family transcriptional regulator | CLV88_108129 | Not Available | Negative | 2765522 - 2766382 | 30998.9 |
| hypothetical protein | CLV88_108130 | Not Available | Positive | 2766464 - 2766760 | 10857.0 |
| hypothetical protein | CLV88_108131 | Not Available | Positive | 2766875 - 2767546 | 24566.6 |
| hypothetical protein | CLV88_108132 | Not Available | Negative | 2767543 - 2767995 | 16069.2 |
| hypothetical protein | CLV88_108133 | Not Available | Negative | 2768068 - 2768157 | 3340.23 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
