Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-pyrone-4,6-dicarboxylate hydrolase | CLV88_108114 | Not Available | Positive | 2752579 - 2753466 | 33551.9 |
| protocatechuate 4,5-dioxygenase alpha subunit | CLV88_108115 | Not Available | Positive | 2753481 - 2753837 | 13243.5 |
| protocatechuate 4,5-dioxygenase beta subunit | CLV88_108116 | Not Available | Positive | 2753850 - 2754695 | 31249.5 |
| arac family transcriptional regulator | CLV88_108117 | Not Available | Negative | 2754692 - 2755594 | 33235.3 |
| p-hydroxybenzoate 3-monooxygenase | CLV88_108118 | Not Available | Positive | 2755649 - 2756818 | 43794.0 |
| cell division protein zape | CLV88_108119 | Not Available | Negative | 2756815 - 2757879 | 39784.0 |
| putative mfs family arabinose efflux permease | CLV88_108120 | Not Available | Positive | 2758019 - 2759254 | 43721.3 |
| ornithine cyclodeaminase | CLV88_108121 | Not Available | Negative | 2759405 - 2760316 | 32920.2 |
| 2-haloacid dehalogenase | CLV88_108122 | Not Available | Negative | 2760313 - 2760936 | 23389.7 |
| eama domain-containing membrane protein rard | CLV88_108123 | Not Available | Negative | 2761006 - 2761956 | 33918.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
