Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-thr | Not Available | Not Available | Positive | 2745074 - 2745149 | Not Available |
| quercetin dioxygenase-like cupin family protein | CLV88_108105 | Not Available | Positive | 2745432 - 2745845 | 14871.5 |
| hypothetical protein | CLV88_108106 | Not Available | Negative | 2745868 - 2746146 | 10711.1 |
| 4-carboxy-2-hydroxymuconate semialdehyde dehydrogenase | CLV88_108107 | Not Available | Negative | 2746306 - 2747250 | 34414.8 |
| protocatechuate 4,5-dioxygenase beta subunit | CLV88_108108 | Not Available | Negative | 2747262 - 2748116 | 31556.7 |
| protocatechuate 4,5-dioxygenase alpha subunit | CLV88_108109 | Not Available | Negative | 2748116 - 2748520 | 15509.0 |
| dna-binding transcriptional lysr family regulator | CLV88_108110 | Not Available | Negative | 2748652 - 2749878 | 44712.7 |
| 4-oxalomesaconate hydratase | CLV88_108111 | Not Available | Positive | 2750007 - 2750744 | 27750.7 |
| 4-carboxy-4-hydroxy-2-oxoadipate aldolase | CLV88_108112 | Not Available | Positive | 2750741 - 2751433 | 24582.7 |
| 4-oxalomesaconate tautomerase | CLV88_108113 | Not Available | Positive | 2751527 - 2752582 | 36337.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
