Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gntr family transcriptional regulator | CLV88_10894 | Not Available | Positive | 2733995 - 2734687 | 26113.2 |
| formiminoglutamate deiminase | CLV88_10895 | Not Available | Negative | 2734688 - 2736055 | 49913.2 |
| imidazolonepropionase | CLV88_10896 | Not Available | Positive | 2736131 - 2737324 | 42365.9 |
| histidine ammonia-lyase | CLV88_10897 | Not Available | Positive | 2737321 - 2738859 | 54145.4 |
| formiminoglutamase | CLV88_10898 | Not Available | Positive | 2738856 - 2739659 | 29385.7 |
| urocanate hydratase | CLV88_10899 | Not Available | Positive | 2739670 - 2741352 | 61484.9 |
| hypothetical protein | CLV88_108100 | Not Available | Positive | 2741378 - 2741491 | 4296.19 |
| hypothetical protein | CLV88_108101 | Not Available | Positive | 2742104 - 2742298 | 7076.67 |
| is5 family transposase | CLV88_108102 | Not Available | Negative | 2742729 - 2743076 | 13093.0 |
| esterase/lipase superfamily enzyme | CLV88_108103 | Not Available | Positive | 2743364 - 2744467 | 40251.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
