Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oxidoreductase family protein | CLV88_10884 | Not Available | Positive | 2722594 - 2723724 | 40938.6 |
| d-mannonate dehydratase | CLV88_10885 | Not Available | Positive | 2723741 - 2724967 | 45093.8 |
| hypothetical protein | CLV88_10886 | Not Available | Negative | 2725145 - 2725471 | 12563.8 |
| oop family ompa-ompf porin | CLV88_10887 | Not Available | Negative | 2725458 - 2727488 | 71574.5 |
| 4-hydroxybenzoate polyprenyltransferase | CLV88_10888 | Not Available | Negative | 2727551 - 2728528 | 35832.0 |
| 16s rrna (uracil1498-n3)-methyltransferase | CLV88_10889 | Not Available | Positive | 2728541 - 2729296 | 27431.1 |
| putative gnat family acetyltransferase | CLV88_10890 | Not Available | Positive | 2729293 - 2730141 | 29997.8 |
| hypothetical protein | CLV88_10891 | Not Available | Positive | 2730138 - 2731085 | 34028.9 |
| hypothetical protein | CLV88_10892 | Not Available | Positive | 2731082 - 2731591 | 18064.3 |
| glutamate--cysteine ligase | CLV88_10893 | Not Available | Positive | 2731668 - 2733038 | 50398.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
