Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetolactate synthase large subunit | CLV88_101237 | Not Available | Positive | 231414 - 233249 | 66661.9 |
| acetolactate synthase small subunit | CLV88_101238 | Not Available | Positive | 233261 - 233824 | 20117.2 |
| hypothetical protein | CLV88_101239 | Not Available | Negative | 233959 - 234333 | 13890.2 |
| cro/c1-type helix-turn-helix dna-binding protein | CLV88_101240 | Not Available | Positive | 234557 - 235372 | 30779.8 |
| putative membrane protein | CLV88_101241 | Not Available | Negative | 235507 - 236292 | 28975.4 |
| amidase | CLV88_101242 | Not Available | Negative | 236358 - 237767 | 50234.2 |
| mate family multidrug resistance protein | CLV88_101243 | Not Available | Negative | 237887 - 239254 | 48691.8 |
| 2-hydroxychromene-2-carboxylate isomerase | CLV88_101244 | Not Available | Positive | 239393 - 240010 | 22945.0 |
| uncharacterized protein (tigr02453 family) | CLV88_101245 | Not Available | Positive | 240007 - 240648 | 23791.3 |
| polyphosphate kinase 2 | CLV88_101246 | Not Available | Negative | 240684 - 241673 | 37538.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
