Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-oxoacyl-[acyl-carrier protein] reductase | CLV88_10874 | Not Available | Negative | 2710922 - 2711665 | 25352.5 |
| heparinase ii/iii-like protein | CLV88_10875 | Not Available | Negative | 2711711 - 2714032 | 87586.1 |
| carbohydrate abc transporter substrate-binding protein (cut1 family) | CLV88_10876 | Not Available | Negative | 2714105 - 2715667 | 58903.7 |
| carbohydrate abc transporter membrane protein 2 (cut1 family) | CLV88_10877 | Not Available | Negative | 2715698 - 2716579 | 33043.8 |
| carbohydrate abc transporter membrane protein 1 (cut1 family) | CLV88_10878 | Not Available | Negative | 2716593 - 2717591 | 37502.9 |
| carbohydrate abc transporter atp-binding protein (cut1 family) | CLV88_10879 | Not Available | Negative | 2717596 - 2718672 | 38706.9 |
| gntr family transcriptional regulator | CLV88_10880 | Not Available | Positive | 2718831 - 2719523 | 26041.2 |
| na+-driven multidrug efflux pump | CLV88_10881 | Not Available | Positive | 2719592 - 2720965 | 49466.1 |
| 4-deoxy-l-threo-5-hexosulose-uronate ketol-isomerase | CLV88_10882 | Not Available | Positive | 2721005 - 2721832 | 30423.2 |
| 2-deoxy-d-gluconate 3-dehydrogenase | CLV88_10883 | Not Available | Positive | 2721829 - 2722584 | 25839.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
