Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deor family transcriptional regulator | CLV88_10864 | Not Available | Positive | 2701629 - 2702429 | 28999.1 |
| rhamnose-binding protein | CLV88_10865 | Not Available | Positive | 2702485 - 2703474 | 33904.3 |
| rhamnose abc transporter atp-binding protein | CLV88_10866 | Not Available | Positive | 2703568 - 2705112 | 55554.3 |
| rhamnose abc transporter membrane protein | CLV88_10867 | Not Available | Positive | 2705109 - 2706086 | 33863.9 |
| monosaccharide abc transporter membrane protein (cut2 family) | CLV88_10868 | Not Available | Positive | 2706083 - 2707084 | 35387.6 |
| l-rhamnose mutarotase | CLV88_10869 | Not Available | Positive | 2707089 - 2707403 | 12289.6 |
| sugar (pentulose or hexulose) kinase | CLV88_10870 | Not Available | Positive | 2707400 - 2708782 | 49438.8 |
| regulator of rnase e activity rraa | CLV88_10871 | Not Available | Negative | 2708898 - 2709644 | 26288.3 |
| 2-keto-3-deoxygluconate kinase | CLV88_10872 | Not Available | Negative | 2709657 - 2710580 | 33405.5 |
| quercetin dioxygenase-like cupin family protein | CLV88_10873 | Not Available | Negative | 2710598 - 2710909 | 11386.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
