Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_10854 | Not Available | Positive | 2690238 - 2690453 | 7799.9 |
| cation:h+ antiporter | CLV88_10855 | Not Available | Positive | 2690456 - 2691406 | 33877.5 |
| nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) | CLV88_10856 | Not Available | Positive | 2691417 - 2692196 | 27568.8 |
| excinuclease abc subunit c | CLV88_10857 | Not Available | Positive | 2692556 - 2694430 | 69080.0 |
| cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | CLV88_10858 | Not Available | Positive | 2694491 - 2695150 | 24445.6 |
| molybdopterin synthase subunit moad | CLV88_10859 | Not Available | Positive | 2695156 - 2695401 | 9008.66 |
| molybdopterin synthase subunit moae | CLV88_10860 | Not Available | Positive | 2695403 - 2695846 | 16546.8 |
| omega-6 fatty acid desaturase (delta-12 desaturase) | CLV88_10861 | Not Available | Positive | 2696112 - 2697146 | 39603.2 |
| l-rhamnose isomerase/sugar isomerase | CLV88_10862 | Not Available | Negative | 2698016 - 2699290 | 46427.6 |
| rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | CLV88_10863 | Not Available | Negative | 2699344 - 2701440 | 75804.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
