Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative hydrolase of the had superfamily | CLV88_10844 | Not Available | Negative | 2680804 - 2681448 | 24257.6 |
| gntr family transcriptional regulator | CLV88_10845 | Not Available | Positive | 2681590 - 2682228 | 23764.3 |
| hypothetical protein | CLV88_10846 | Not Available | Negative | 2682225 - 2684132 | 71959.2 |
| carbamoyl-phosphate synthase small subunit | CLV88_10847 | Not Available | Negative | 2684231 - 2685388 | 41444.7 |
| hypothetical protein | CLV88_10848 | Not Available | Positive | 2685582 - 2686049 | 17031.6 |
| ectoine hydroxylase-related dioxygenase (phytanoyl-coa dioxygenase family) | CLV88_10849 | Not Available | Negative | 2686121 - 2686903 | 29141.1 |
| hypothetical protein | CLV88_10850 | Not Available | Positive | 2687047 - 2687565 | 17652.8 |
| abc-2 type transport system atp-binding protein | CLV88_10851 | Not Available | Positive | 2687667 - 2688596 | 33871.1 |
| abc-2 type transport system permease protein | CLV88_10852 | Not Available | Positive | 2688593 - 2689354 | 27710.8 |
| serine protease sohb | CLV88_10853 | Not Available | Positive | 2689508 - 2690284 | 27834.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
