Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| signal recognition particle-docking protein ftsy | CLV88_10813 | Not Available | Positive | 2648537 - 2649739 | 42202.5 |
| eama-like transporter family protein | CLV88_10814 | Not Available | Positive | 2649759 - 2650661 | 32301.3 |
| intracellular septation protein | CLV88_10815 | Not Available | Positive | 2650674 - 2651279 | 22864.7 |
| gst-like protein | CLV88_10816 | Not Available | Negative | 2651287 - 2651976 | 26066.8 |
| alpha/beta hydrolase family protein duf900 | CLV88_10817 | Not Available | Negative | 2651997 - 2652896 | 32636.8 |
| o-succinylhomoserine sulfhydrylase | CLV88_10819 | Not Available | Positive | 2653147 - 2654334 | 42309.4 |
| gtp cyclohydrolase i | CLV88_10820 | Not Available | Positive | 2654498 - 2655598 | 41457.1 |
| trk system potassium uptake protein trkh | CLV88_10821 | Not Available | Positive | 2655681 - 2657129 | 51759.2 |
| acetolactate synthase-1/2/3 large subunit/5-guanidino-2-oxopentanoate decarboxylase | CLV88_10822 | Not Available | Positive | 2657129 - 2658757 | 58074.4 |
| putative peptidoglycan binding protein | CLV88_10823 | Not Available | Negative | 2658817 - 2660562 | 62380.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
