Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family) | CLV88_1082 | Not Available | Positive | 2636068 - 2636832 | 27006.2 |
| 2-dehydro-3-deoxygalactonokinase | CLV88_1083 | Not Available | Positive | 2636836 - 2637738 | 31932.8 |
| 2-keto-3-deoxy-phosphogalactonate aldolase | CLV88_1084 | Not Available | Positive | 2637735 - 2638340 | 20203.2 |
| sugar lactone lactonase yvre | CLV88_1085 | Not Available | Positive | 2638337 - 2639197 | 31046.3 |
| beta-galactosidase | CLV88_1086 | Not Available | Positive | 2639194 - 2641116 | 70953.6 |
| nadph-dependent glutamate synthase beta subunit-like oxidoreductase | CLV88_1087 | Not Available | Positive | 2641340 - 2643139 | 66237.7 |
| 2-oxoglutarate ferredoxin oxidoreductase subunit alpha | CLV88_1088 | Not Available | Positive | 2643136 - 2645016 | 69086.8 |
| 2-oxoglutarate ferredoxin oxidoreductase subunit beta | CLV88_1089 | Not Available | Positive | 2645016 - 2646065 | 37348.2 |
| las17-binding protein actin regulator | CLV88_10810 | Not Available | Positive | 2646217 - 2647218 | 35443.9 |
| yhhn-like protein | CLV88_10812 | Not Available | Positive | 2647812 - 2648498 | 24692.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
