Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_107138 | Not Available | Positive | 2621579 - 2623060 | 53489.2 |
| chat domain-containing protein | CLV88_107139 | Not Available | Positive | 2623072 - 2626062 | 105306.0 |
| acetyltransferase (gnat) family protein | CLV88_107140 | Not Available | Negative | 2626131 - 2626964 | 29632.2 |
| short-subunit dehydrogenase | CLV88_107141 | Not Available | Positive | 2627127 - 2627954 | 30532.6 |
| nad-dependent formate dehydrogenase catalytic subunit /nad-dependent formate dehydrogenase iron-sulfur protein | CLV88_107142 | Not Available | Negative | 2628041 - 2630833 | 100981.0 |
| catechol 2,3-dioxygenase-like lactoylglutathione lyase family enzyme | CLV88_107143 | Not Available | Negative | 2630844 - 2631224 | 13596.0 |
| nad-dependent formate dehydrogenase flavoprotein subunit | CLV88_107144 | Not Available | Negative | 2631227 - 2632918 | 61150.9 |
| iclr family transcriptional regulator | CLV88_107145 | Not Available | Positive | 2633193 - 2634002 | 29166.8 |
| flip-like protein | CLV88_107146 | Not Available | Negative | 2634045 - 2634561 | 18936.4 |
| alpha-galactosidase | CLV88_1081 | Not Available | Positive | 2634630 - 2635970 | 49247.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
