Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized protein duf3604 | CLV88_107128 | Not Available | Negative | 2606760 - 2608700 | 71202.0 |
| trypsin | CLV88_107129 | Not Available | Negative | 2608942 - 2610000 | 37653.4 |
| caspase domain-containing protein | CLV88_107130 | Not Available | Negative | 2610015 - 2612075 | 72209.6 |
| patatin-like phospholipase | CLV88_107131 | Not Available | Negative | 2612155 - 2613564 | 50777.1 |
| signal transduction histidine kinase | CLV88_107132 | Not Available | Negative | 2613613 - 2614983 | 49923.9 |
| dna-binding response ompr family regulator | CLV88_107133 | Not Available | Negative | 2614985 - 2615686 | 25203.3 |
| s1-c subfamily serine protease | CLV88_107134 | Not Available | Negative | 2615710 - 2617005 | 45848.7 |
| hypothetical protein | CLV88_107135 | Not Available | Positive | 2617180 - 2617803 | 22105.2 |
| caspase domain-containing protein | CLV88_107136 | Not Available | Positive | 2617815 - 2619917 | 74525.4 |
| chat domain-containing protein | CLV88_107137 | Not Available | Positive | 2619921 - 2621579 | 58901.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
