Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate aminotransferase | CLV88_101227 | Not Available | Positive | 219665 - 220867 | 42801.1 |
| hypothetical protein | CLV88_101228 | Not Available | Positive | 220941 - 221348 | 15537.6 |
| peptide chain release factor 2 (brf-2) | CLV88_101229 | Not Available | Negative | 221576 - 222703 | 41575.2 |
| penicillin-binding protein 1a | CLV88_101230 | Not Available | Negative | 222849 - 225404 | 94148.8 |
| hypothetical protein | CLV88_101231 | Not Available | Negative | 225566 - 226045 | 17196.7 |
| n-acetylmuramoyl-l-alanine amidase | CLV88_101232 | Not Available | Negative | 226131 - 227351 | 44211.4 |
| aspartate/methionine/tyrosine aminotransferase | CLV88_101233 | Not Available | Negative | 227494 - 228651 | 41988.1 |
| putative zn-dependent protease | CLV88_101234 | Not Available | Positive | 228693 - 230036 | 48462.4 |
| protein-disulfide isomerase | CLV88_101235 | Not Available | Positive | 230048 - 230794 | 27230.2 |
| hypothetical protein | CLV88_101236 | Not Available | Negative | 230815 - 231189 | 14236.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
