Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadp-dependent 3-hydroxy acid dehydrogenase ydfg | CLV88_107118 | Not Available | Positive | 2596787 - 2597551 | 26601.3 |
| exopolysaccharide biosynthesis wecb/taga/cpsf family protein | CLV88_107119 | Not Available | Negative | 2597569 - 2598378 | 28349.3 |
| putative dehydrogenase | CLV88_107120 | Not Available | Positive | 2598524 - 2599594 | 38961.4 |
| udp-glucose 4-epimerase | CLV88_107121 | Not Available | Positive | 2599591 - 2600532 | 33059.9 |
| glycosyltransferase involved in cell wall biosynthesis | CLV88_107122 | Not Available | Positive | 2600529 - 2601746 | 43896.2 |
| gt2 family glycosyltransferase | CLV88_107123 | Not Available | Positive | 2601743 - 2602714 | 35229.5 |
| mrp family chromosome partitioning atpase | CLV88_107124 | Not Available | Positive | 2602814 - 2603584 | 28052.4 |
| laci family transcriptional regulator | CLV88_107125 | Not Available | Negative | 2603597 - 2604616 | 36549.7 |
| ectoine hydroxylase-related dioxygenase (phytanoyl-coa dioxygenase family) | CLV88_107126 | Not Available | Positive | 2604695 - 2605876 | 43069.7 |
| hypothetical protein | CLV88_107127 | Not Available | Positive | 2605984 - 2606688 | 24768.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
