Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl transferase domain-containing protein | CLV88_107108 | Not Available | Positive | 2575379 - 2581810 | 232262.0 |
| hypothetical protein | CLV88_107109 | Not Available | Positive | 2581807 - 2582832 | 38408.9 |
| natural product biosynthesis luciferase-like monooxygenase protein | CLV88_107110 | Not Available | Positive | 2582829 - 2587478 | 166790.0 |
| 4'-phosphopantetheinyl transferase entd | CLV88_107111 | Not Available | Positive | 2587475 - 2588206 | 25753.7 |
| uncharacterized protein involved in exopolysaccharide biosynthesis | CLV88_107112 | Not Available | Positive | 2588281 - 2589558 | 47984.3 |
| lipopolysaccharide/colanic/teichoic acid biosynthesis glycosyltransferase | CLV88_107113 | Not Available | Positive | 2590129 - 2590911 | 29599.3 |
| hypothetical protein | CLV88_107114 | Not Available | Positive | 2591075 - 2592565 | 55395.1 |
| serine o-acetyltransferase | CLV88_107115 | Not Available | Negative | 2592573 - 2593088 | 18464.2 |
| peptidoglycan/lps o-acetylase oafa/yrhl | CLV88_107116 | Not Available | Positive | 2593225 - 2595246 | 74161.5 |
| choline dehydrogenase-like flavoprotein | CLV88_107117 | Not Available | Positive | 2595243 - 2596790 | 55828.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
