Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| zinc transport system substrate-binding protein | CLV88_10798 | Not Available | Negative | 2560880 - 2561974 | 39740.6 |
| fur family zinc uptake transcriptional regulator | CLV88_10799 | Not Available | Positive | 2562060 - 2562545 | 17212.6 |
| zinc transport system atp-binding protein | CLV88_107100 | Not Available | Positive | 2562542 - 2563339 | 28650.0 |
| zinc transport system permease protein | CLV88_107101 | Not Available | Positive | 2563332 - 2564126 | 27263.2 |
| 2-polyprenyl-6-methoxyphenol hydroxylase-like fad-dependent oxidoreductase | CLV88_107102 | Not Available | Positive | 2564433 - 2565749 | 47920.8 |
| hypothetical protein | CLV88_107103 | Not Available | Positive | 2566231 - 2568126 | 68795.1 |
| cubico group peptidase (beta-lactamase class c family) | CLV88_107104 | Not Available | Negative | 2568578 - 2569822 | 44309.0 |
| hypothetical protein | CLV88_107105 | Not Available | Positive | 2570025 - 2572991 | 109686.0 |
| glycosyl transferase family 2 | CLV88_107106 | Not Available | Positive | 2573088 - 2573912 | 28876.5 |
| o-antigen/teichoic acid export membrane protein | CLV88_107107 | Not Available | Positive | 2573909 - 2575276 | 49038.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
