Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sulfotransferase family protein | CLV88_10788 | Not Available | Negative | 2548668 - 2549429 | 28915.9 |
| alpha 1,4-glycosyltransferase | CLV88_10789 | Not Available | Negative | 2549431 - 2550438 | 38524.1 |
| glycosyl transferase family 2 | CLV88_10790 | Not Available | Negative | 2550538 - 2552793 | 84015.0 |
| glycosyl transferase family 2 | CLV88_10791 | Not Available | Negative | 2552839 - 2553891 | 39039.8 |
| enamine deaminase rida (yjgf/yer057c/uk114 family) | CLV88_10792 | Not Available | Negative | 2554051 - 2554440 | 14011.6 |
| creatinine amidohydrolase | CLV88_10793 | Not Available | Positive | 2554623 - 2555402 | 27737.6 |
| cytosine deaminase | CLV88_10794 | Not Available | Positive | 2555411 - 2556625 | 43082.7 |
| fad/fmn-containing dehydrogenase | CLV88_10795 | Not Available | Positive | 2556622 - 2558031 | 51317.1 |
| peptide/nickel transport system substrate-binding protein | CLV88_10796 | Not Available | Positive | 2558595 - 2560259 | 61171.5 |
| putative small integral membrane protein | CLV88_10797 | Not Available | Positive | 2560327 - 2560809 | 17960.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
