Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | CLV88_10778 | Not Available | Negative | 2533530 - 2533790 | 9461.59 |
| subtilisin | CLV88_10779 | Not Available | Negative | 2533795 - 2535285 | 51185.3 |
| hypothetical protein | CLV88_10780 | Not Available | Negative | 2535705 - 2538155 | 90966.7 |
| dtdp-4-amino-4,6-dideoxygalactose transaminase | CLV88_10781 | Not Available | Negative | 2538245 - 2539543 | 47247.9 |
| hypothetical protein | CLV88_10782 | Not Available | Negative | 2539649 - 2541532 | 69384.7 |
| glutaryl-coa dehydrogenase | CLV88_10783 | Not Available | Positive | 2541971 - 2543179 | 44020.6 |
| branched-chain alpha-keto acid dehydrogenase e1 component | CLV88_10784 | Not Available | Positive | 2543200 - 2545383 | 78210.3 |
| hypothetical protein | CLV88_10785 | Not Available | Positive | 2545380 - 2546417 | 37239.7 |
| laci family transcriptional regulator | CLV88_10786 | Not Available | Positive | 2546585 - 2547622 | 37096.8 |
| hypothetical protein | CLV88_10787 | Not Available | Negative | 2547745 - 2548665 | 35530.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
