Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nicotinamidase/pyrazinamidase | CLV88_10768 | Not Available | Negative | 2522217 - 2522816 | 21321.1 |
| hypothetical protein | CLV88_10769 | Not Available | Negative | 2523162 - 2524172 | 37991.3 |
| ubiquinol-cytochrome c reductase cytochrome c1 subunit | CLV88_10770 | Not Available | Negative | 2524417 - 2525211 | 28653.3 |
| ubiquinol-cytochrome c reductase cytochrome b subunit | CLV88_10771 | Not Available | Negative | 2525227 - 2526540 | 49514.2 |
| ubiquinol-cytochrome c reductase iron-sulfur subunit | CLV88_10772 | Not Available | Negative | 2526553 - 2527113 | 19927.4 |
| dna-binding transcriptional lysr family regulator | CLV88_10773 | Not Available | Positive | 2527499 - 2528380 | 31720.6 |
| putative mfs family arabinose efflux permease | CLV88_10774 | Not Available | Positive | 2528465 - 2529667 | 40841.8 |
| lysr family transcriptional regulator | CLV88_10775 | Not Available | Negative | 2529700 - 2530611 | 33171.6 |
| catechol 2,3-dioxygenase-like lactoylglutathione lyase family enzyme | CLV88_10776 | Not Available | Negative | 2530741 - 2531154 | 15730.4 |
| trypsin-like peptidase | CLV88_10777 | Not Available | Negative | 2531266 - 2533290 | 74228.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
