Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| penicillin-insensitive murein endopeptidase | CLV88_10758 | Not Available | Positive | 2511881 - 2512795 | 33577.1 |
| hypothetical protein | CLV88_10759 | Not Available | Positive | 2512768 - 2513670 | 33792.3 |
| hypothetical protein | CLV88_10760 | Not Available | Positive | 2513709 - 2514392 | 24725.9 |
| ribosome-associated protein | CLV88_10761 | Not Available | Positive | 2514781 - 2515203 | 15976.3 |
| teichuronopeptide biosynthesis tupa-like protein | CLV88_10762 | Not Available | Negative | 2515172 - 2516188 | 38999.7 |
| 4-aminobutyrate aminotransferase-like enzyme | CLV88_10763 | Not Available | Positive | 2516318 - 2517583 | 45737.3 |
| ser/thr protein kinase rdoa (mazf antagonist) | CLV88_10764 | Not Available | Positive | 2517580 - 2518527 | 34862.5 |
| nicotinate phosphoribosyltransferase | CLV88_10765 | Not Available | Negative | 2518536 - 2519828 | 49744.5 |
| hypothetical protein | CLV88_10766 | Not Available | Negative | 2519878 - 2521578 | 61592.1 |
| hypothetical protein | CLV88_10767 | Not Available | Negative | 2521630 - 2522142 | 18667.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
