Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetyl-coa c-acetyltransferase | CLV88_10748 | Not Available | Positive | 2495456 - 2496631 | 40415.6 |
| penicillin-binding protein 1c | CLV88_10749 | Not Available | Negative | 2496773 - 2498815 | 73704.0 |
| hypothetical protein | CLV88_10750 | Not Available | Negative | 2498815 - 2504250 | 195980.0 |
| pas domain-containing protein | CLV88_10751 | Not Available | Positive | 2504398 - 2505336 | 35139.9 |
| response regulator receiver domain-containing protein | CLV88_10752 | Not Available | Positive | 2505276 - 2506589 | 47389.0 |
| hypothetical protein | CLV88_10753 | Not Available | Negative | 2506574 - 2507347 | 28724.2 |
| atp-dependent dna helicase recq | CLV88_10754 | Not Available | Negative | 2507378 - 2509417 | 74374.2 |
| yggt family protein | CLV88_10755 | Not Available | Negative | 2509502 - 2509783 | 10736.8 |
| acyl-coa thioesterase fadm | CLV88_10756 | Not Available | Positive | 2509908 - 2510450 | 20972.5 |
| umf1 family mfs transporter | CLV88_10757 | Not Available | Positive | 2510514 - 2511899 | 49779.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
