Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arsenate reductase | CLV88_101217 | Not Available | Negative | 214108 - 214422 | 11646.0 |
| putative cold-shock dna-binding protein | CLV88_101218 | Not Available | Positive | 214617 - 214823 | 7561.99 |
| hypothetical protein | CLV88_101219 | Not Available | Negative | 214865 - 215164 | 10321.4 |
| thymidylate synthase (fad) | CLV88_101220 | Not Available | Negative | 215321 - 216229 | 34629.1 |
| lactoylglutathione lyase | CLV88_101221 | Not Available | Positive | 216414 - 216842 | 16155.0 |
| uncharacterized protein duf1194 | CLV88_101222 | Not Available | Positive | 216839 - 217555 | 25500.5 |
| uncharacterized protein duf1194 | CLV88_101223 | Not Available | Positive | 217552 - 218277 | 25789.7 |
| marr family transcriptional regulator | CLV88_101224 | Not Available | Negative | 218317 - 218814 | 19014.9 |
| antitoxin cptb | CLV88_101225 | Not Available | Negative | 218905 - 219135 | 8849.62 |
| helix-turn-helix protein | CLV88_101226 | Not Available | Negative | 219161 - 219577 | 15246.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
