Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gst-like protein | CLV88_10718 | Not Available | Positive | 2466407 - 2467105 | 25730.9 |
| ytoq family protein | CLV88_10719 | Not Available | Negative | 2467144 - 2467593 | 16243.2 |
| ubiquinone/menaquinone biosynthesis c-methylase ubie | CLV88_10720 | Not Available | Negative | 2467692 - 2468324 | 22905.7 |
| lysr family transcriptional regulator | CLV88_10721 | Not Available | Positive | 2468420 - 2469310 | 32995.7 |
| n-acetylglutamate synthase-like gnat family acetyltransferase | CLV88_10722 | Not Available | Negative | 2469321 - 2469746 | 14756.7 |
| phenylalanyl-trna synthetase beta subunit | CLV88_10723 | Not Available | Negative | 2469750 - 2472149 | 85333.1 |
| polyhydroxybutyrate depolymerase | CLV88_10724 | Not Available | Negative | 2472239 - 2473051 | 29434.5 |
| uncharacterized protein duf2652 | CLV88_10725 | Not Available | Positive | 2473377 - 2474510 | 42176.6 |
| gmp synthase (glutamine-hydrolysing) | CLV88_10726 | Not Available | Negative | 2474520 - 2475311 | 27828.7 |
| phenylalanyl-trna synthetase alpha subunit | CLV88_10727 | Not Available | Negative | 2475406 - 2476476 | 39507.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
