Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| membrane glycosyltransferase | CLV88_1078 | Not Available | Negative | 2453678 - 2455570 | 69546.3 |
| glucans biosynthesis protein | CLV88_1079 | Not Available | Negative | 2455567 - 2457108 | 57340.3 |
| hypothetical protein | CLV88_10710 | Not Available | Negative | 2457113 - 2458315 | 45081.0 |
| hypothetical protein | CLV88_10711 | Not Available | Negative | 2458333 - 2459694 | 49606.8 |
| formyl-coa transferase | CLV88_10712 | Not Available | Negative | 2459823 - 2461040 | 43341.6 |
| acetolactate synthase-1/2/3 large subunit | CLV88_10713 | Not Available | Negative | 2461024 - 2462622 | 55342.6 |
| asnc family transcriptional regulator | CLV88_10714 | Not Available | Negative | 2462722 - 2463180 | 17089.7 |
| l-alanine dehydrogenase | CLV88_10715 | Not Available | Positive | 2463319 - 2464440 | 38898.9 |
| hypothetical protein | CLV88_10716 | Not Available | Negative | 2464580 - 2465197 | 22963.3 |
| small conductance mechanosensitive channel | CLV88_10717 | Not Available | Negative | 2465410 - 2466216 | 28855.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
