Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| snoal-like protein | CLV88_106193 | Not Available | Negative | 2443710 - 2444105 | 14627.9 |
| 3-hydroxyisobutyrate dehydrogenase-like beta-hydroxyacid dehydrogenase | CLV88_106194 | Not Available | Negative | 2444399 - 2445265 | 30280.6 |
| hypothetical protein | CLV88_106195 | Not Available | Positive | 2445566 - 2445652 | 3488.4 |
| atp-dependent rna helicase dead | CLV88_1071 | Not Available | Negative | 2446570 - 2448609 | 73008.6 |
| hypothetical protein | CLV88_1072 | Not Available | Positive | 2448853 - 2450001 | 41256.1 |
| winged helix dna-binding protein | CLV88_1073 | Not Available | Positive | 2450159 - 2450440 | 10352.5 |
| gst-like protein | CLV88_1074 | Not Available | Positive | 2450561 - 2451430 | 32562.3 |
| yhs domain-containing protein | CLV88_1075 | Not Available | Positive | 2451707 - 2452219 | 18069.1 |
| rhodanese-related sulfurtransferase | CLV88_1076 | Not Available | Positive | 2452235 - 2452690 | 16339.9 |
| polyhydroxybutyrate depolymerase | CLV88_1077 | Not Available | Positive | 2452701 - 2453543 | 30604.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
