Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna-binding csgd family transcriptional regulator | CLV88_106183 | Not Available | Positive | 2433666 - 2434175 | 18719.7 |
| putative ferric reductase | CLV88_106184 | Not Available | Positive | 2434186 - 2435496 | 47279.2 |
| tetratricopeptide repeat protein | CLV88_106185 | Not Available | Negative | 2435587 - 2437350 | 64719.5 |
| xre family transcriptional regulator | CLV88_106186 | Not Available | Negative | 2437386 - 2438009 | 23343.9 |
| acyl-coa synthetase (amp-forming)/amp-acid ligase ii | CLV88_106187 | Not Available | Positive | 2438076 - 2439590 | 54401.0 |
| putative dsba family dithiol-disulfide isomerase | CLV88_106188 | Not Available | Positive | 2439594 - 2440235 | 23648.1 |
| voltage-gated potassium channel | CLV88_106189 | Not Available | Positive | 2440232 - 2440612 | 14036.9 |
| dha1 family bicyclomycin/chloramphenicol resistance-like mfs transporter | CLV88_106190 | Not Available | Positive | 2440620 - 2441819 | 43231.4 |
| hypothetical protein | CLV88_106191 | Not Available | Positive | 2441861 - 2443531 | 62299.7 |
| hypothetical protein | CLV88_106192 | Not Available | Positive | 2443578 - 2443778 | 7269.58 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
