Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-acylneuraminate cytidylyltransferase | CLV88_106153 | Not Available | Negative | 2400441 - 2401151 | 26143.1 |
| hypothetical protein | CLV88_106154 | Not Available | Negative | 2401155 - 2402039 | 33564.2 |
| kdo2-lipid iv(a) lauroyltransferase | CLV88_106155 | Not Available | Positive | 2402199 - 2403095 | 33116.3 |
| cytochrome c2 | CLV88_106156 | Not Available | Positive | 2403367 - 2404188 | 29275.0 |
| hypothetical protein | CLV88_106157 | Not Available | Positive | 2404489 - 2404725 | 8663.55 |
| 23s rrna um-2552 2'-o-methyltransferase | CLV88_106158 | Not Available | Negative | 2404722 - 2405537 | 29449.4 |
| ppx/gppa phosphatase | CLV88_106159 | Not Available | Negative | 2405509 - 2406624 | 41084.8 |
| hypothetical protein | CLV88_106160 | Not Available | Positive | 2406803 - 2408686 | 67882.1 |
| cytochrome p450 | CLV88_106161 | Not Available | Negative | 2408836 - 2410182 | 51500.2 |
| hypothetical protein | CLV88_106162 | Not Available | Negative | 2410179 - 2411393 | 45371.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
