Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Shimia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Shimia |
| Species | Shimia abyssi |
| Strain | DSM 100673 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | star/dumbbell/pleomorphic |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | deep seawater |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | organotroph; chemotroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1044865 bp
Thymine Count
1029763 bp
Guanine Count
1300044 bp
Cytosine Count
1357929 bp
Genome Length
4732601 bp
Protein-coding Genes
4533 genes
Non-Coding Genes
68 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac family transcriptional regulator with amidase-like domain | CLV88_106133 | Not Available | Positive | 2382840 - 2383841 | 37890.4 |
| hypothetical protein | CLV88_106134 | Not Available | Negative | 2383858 - 2384367 | 19156.4 |
| glucose/arabinose dehydrogenase | CLV88_106135 | Not Available | Negative | 2384412 - 2385509 | 39516.2 |
| amino acid/amide abc transporter substrate-binding protein (haat family) | CLV88_106136 | Not Available | Positive | 2385676 - 2386860 | 38974.8 |
| amino acid/amide abc transporter atp-binding protein 1 (haat family) | CLV88_106137 | Not Available | Positive | 2386970 - 2387752 | 28295.5 |
| hypothetical protein | CLV88_106138 | Not Available | Positive | 2387749 - 2388120 | 13369.9 |
| amino acid/amide abc transporter atp-binding protein 2 (haat family) | CLV88_106139 | Not Available | Positive | 2388162 - 2388986 | 29318.1 |
| hypothetical protein | CLV88_106140 | Not Available | Positive | 2388989 - 2389447 | 16764.2 |
| amino acid/amide abc transporter membrane protein 1 (haat family) | CLV88_106141 | Not Available | Positive | 2389490 - 2390500 | 36440.9 |
| amino acid/amide abc transporter membrane protein 2 (haat family) | CLV88_106142 | Not Available | Positive | 2390497 - 2391801 | 46046.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
